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  • BCCRC

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Achievement: Pull Sharkx2Achievement: YOLOAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pull Sharkx2Achievement: YOLOAchievement: Arctic Code Vault Contributor

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  1. LCR-BCCRC/lcr-modules LCR-BCCRC/lcr-modules Public

    Collection of standard analytical pipelines for genomic and transcriptomic data

    Python 17 7

  2. uclahs-cds/package-CancerEvolutionVisualization uclahs-cds/package-CancerEvolutionVisualization Public

    Publication Quality Phylogenetic Tree Plots

    R 2

  3. uclahs-cds/package-bedr uclahs-cds/package-bedr Public

    Genomic Region Processing using Tools Such as `BEDTools`, `BEDOPS` and `Tabix`

    R 3

  4. uclahs-cds/tool-NFTest uclahs-cds/tool-NFTest Public

    CLI to automate Nextflow pipeline testing

    Python 12 2

  5. uclahs-cds/metapipeline-DNA uclahs-cds/metapipeline-DNA Public

    Nextflow pipeline to convert BAM to FASTQ, align, perform QC, assess targeted coverage, call gSNP, call sSNV, call mtSNV, call SVs, call sCNA, and perform subclonal reconstruction

    Groovy 11 1