mag 5.2.0 - Puce Pangolin

Added

• #842 - Add support for running multiple binQC tools in one run using dedicated --run_busco, --run_checkm, and --run_checkm2 parameters (by @harper357, with contributions from @dialvarezs, @prototaxites and @jfy133)
• #881 - Add binner MetaBinner (by @d4straub, insprired by @HeshamAlmessady & @AlphaSquad)

Changed

• #842 - Change bin_summary.tsv format for improved clarity and more comprehensiveness (by @harper357, with contributions from @dialvarezs, @prototaxites and @jfy133)
  • Now will include columns from all bin QC tools executed in a given run (i.e., all/any of BUSCO, CheckM and CheckM2)
  • Adds suffixes to all columns (_<toolname>) to distinguish which column comes from which tool

Fixed

• #896 - Remove obsolete execution command from README (by @dialvarezs)
• #907 - Include refined bins from all binners in the DASTool/bins output folder (by @AlexHoratio)
• #911 - Ensure column order is consistent when generating depth summaries to prevent swapped results on merged depth summary (by @dialvarezs)
• #912 - Fix validation of multiple sequencing platforms when using binning_map_mode = "all" (reported by @mjfi2sb3, fix by @dialvarezs)
• #921 - Fix publishing of BUSCO files (reported by @joao1980, fix by @dialvarezs)

Dependencies

Tool	Previous version	New version
MetaBinner		1.4.4-0

Deprecated

• #842 - Remove --binqc_tool (by @harper357, with contributions from @dialvarezs, @prototaxites and @jfy133)