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add tax_class metagraph CLI + integration tests #348

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heracle wants to merge 17 commits into from
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add tax_class metagraph CLI + integration tests #348

heracle wants to merge 17 commits into from

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@heracle heracle commented Aug 2, 2021

the last PR for tax_class on the fly / without any taxonomic database.

Testing workflow:

python3 ../integration_tests/main.py --test_filter "test_taxonomy_"

./unit_tests --gtest_filter=TaxonomyTest.ClsAnno_ClassifierUpdateScoresAndLca && ./unit_tests --gtest_filter=TaxonomyTest.ClsAnno_KmerToTaxidUpdate && ./unit_tests --gtest_filter=TaxonomyTest.ClsAnno_FindLca && ./unit_tests --gtest_filter=TaxonomyTest.ClsAnno_RmqPreprocessing && ./unit_tests --gtest_filter=TaxonomyTest.ClsAnno_DfsStatistics

@heracle heracle requested review from hmusta and karasikov August 2, 2021 19:50
@heracle heracle mentioned this pull request Aug 3, 2021
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@heracle heracle force-pushed the mtg_taxclass_5 branch 3 times, most recently from 8d7af51 to 3bd87ef Compare August 4, 2021 15:32
@heracle heracle marked this pull request as draft September 2, 2021 08:23
@heracle heracle force-pushed the mtg_taxclass_4 branch 3 times, most recently from b905d46 to d93dd4d Compare September 14, 2021 06:14
@heracle heracle force-pushed the mtg_taxclass_4 branch 2 times, most recently from ee58d8e to 366b99a Compare September 14, 2021 11:39
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heracle commented Sep 14, 2021

close after moving to #347

@heracle heracle closed this Sep 14, 2021
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@hmusta hmusta Awaiting requested review from hmusta

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